rs46920495 SNP Detail

Summary

• ID
  rs46920495
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56298985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGTAAA TAAAGAAAAT
  ATTCTATTAA AAAAAGGAGA TTAAAGGTTT CTTTGAGTTT ATTTAAAAAA AAAAAGAGTT
  TCTGAGTTCA TGGTGCCTCT TTACATGCCA GAGTGGTTTT TGAGGTAGCA CTGTTTTAAA
  GCTCACAAAT GTGGTTTAAT TGTTAACAAG CACCTCTAAG ACCTGCCATT TGCAGTGATG
  T
  TGTTGCAAAT ACATTAAAGG CTTTCTCTTT AACCATGATT TCATAGTGTT CATTCATTCC
  TGCCACATAT AGTTTAGGGT GGCACATGTC AGAGTCAACA ACAATACAAG CTGGTCTAGA
  ACTTATTGTG GAGGCTGGTC TCTAAGTCAC AGCAGTCCTC CTGCCTCAGA GCTCCTGACT
  GCTGGAATTC CAGGCATTAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133224505	ENSMUSSNP456996	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46920495					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56298985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			794 bp proximal