rs46913554 SNP Detail

Summary

• ID
  rs46913554
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153431625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACC CAAGAGGTGA CATGGGCAAA
  S
  TGGAACCTGG TCCTCTCTGG GTCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136111713	ENSMUSSNP1208208	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321031068	CHEV_3_153388952	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46913554					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153431625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13961	CpG island 13961	490 bp distal
Rr587740	regulatory region 587740	825 bp distal
Rr587741	regulatory region 587741	324 bp distal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	821 bp upstream
Tssr36240	transcription start site region 36240	809 bp upstream