rs46913477 SNP Detail

Summary

• ID
  rs46913477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152987898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGAAA GAAGGGTGCC
  TGGGTGAAAA GAGCAGAGGT TTAAAGACCA TTCCTGAGAC AGCCGGTGGG GCTTCTGGGG
  CATCCCCACA TAAAACAGGC AGTGAACACC TGCCTCTCCA AATTCCAATC TTTGTCAGCA
  CGTGGTGCCA CCAAAAGAGG CACAGCTTCA TCTCTGGCAC AAGGCCAGCC ATCCCGTCTT
  Y
  CCTCTGGTGG CTCTCTCACC GGGTGCAGTG CAAGGTTGTC AAGCAAGACT GAAATCTGAT
  TGATTTCCCA CTGGCAACCA GCCACACTGC TGCCTGGACT ATGCTTTCGT GAAGTTAGCT
  AAATATTTAA TGGAATATTA AGAGAAAATG TCTGTCTATG TAATGCAAAC ATATTGTTAG
  GCTGGCTGAA GGGTCGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136107431	ENSMUSSNP1696172	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321030503	CHEV_3_152945225	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46913477					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152987898 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant