rs46909746 SNP Detail

Summary

• ID
  rs46909746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139516467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACCCCACT CCTGCCCATC TGTTGAACTC ATCTTTCTCT
  TGGACATTCA GCCAGCATCA CAAAACTCAG CCTCAGGCCC CAGCCCTCTG TCCTGACCAA
  R
  TCTGACCACT GGCCCTAGTG ACAAGGACTC ACTCAGACAC CCTGTCCCAG GTAGGCTGTG
  CACCCACCGG TTTGGGGAGA AGGGAGGGAG CCGAGAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147681634	ENSMUSSNP5082263	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321384511	CHEV_4_139345071	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46909746					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139516467 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	Intron
Rr603302	regulatory region 603302	720 bp proximal
Rr603303	regulatory region 603303	809 bp proximal