rs46901992 SNP Detail

Summary

• ID
  rs46901992
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTTAGA AATAAAGAAT
  GGCTATATTT ATAGCTTCCT AGCACTGATA ACAAAGTGCT AGTACTCTTT TATCTTCCAT
  ATCTTACGCT TCCAGAGGTT GGGGTGAGCC CAGAATTTGG GGGAACCAAC ATACAGGCAG
  TAGCAGGGTA TCTGCTCTTT GGAGGCTGAA GGAGAGAAGT CATTTCCTCA CCCTTTCCTC
  G
  TGGAGACTGA CGACACTCCT TGGCTTGTGA ATATTCTCAC AGCAAGACTT CCTGGCTGTG
  CCTCTCCTGC CTTCCTTTTA CCTACAGAGA CCCTTAGAAT ATTAAATTTG TGCCTAACTA
  GTAGCACAGG ATAATCTTCC GGGCACAAAA TACTTGATCA CATCTGCACA ATCTGTCTCC
  AAAAGAAGGG GTATGGATAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146246453	ENSMUSSNP5636177	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs46901992					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1689 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1989 bp distal
Rr591150	regulatory region 591150	1492 bp distal
Rr591151	regulatory region 591151	1759 bp distal
Rr591152	regulatory region 591152	570 bp distal
Tssr41485	transcription start site region 41485	1735 bp upstream