rs46901084 SNP Detail

Summary

• ID
  rs46901084
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTAGAAT TGATAAAACT
  TGGTGACAAC TTCAGTGAGA AGCCACAGAG TCATCAGGTT TGTCCCATTC TTCAAACTGT
  AGCGTGCGTG CAGATCAGAG GACACCTTGA TTGGGTTCTC GTCTTCTACC GTGTTGAGTC
  AGAGTCTCTG TCCTTCCTGC TGTGTGGTGT AGCAGGCTGG CTTCCTGCAT CCATCCGAGT
  C
  TCCTTCCATC TGCCTGGCAG CTCTCCCTGG GAAAGCTGAG ATCACAGCTG TGCCCCACTG
  CATTGTGGGC TTTGAGGAAT CAGACTCAGG TTGTCAGGCT TGTCGGGCAA CCCTGTCCTT
  TACTGACGGA TGTTGGGAGG AAGCAGGACC TGGAGCACAG TGAATAAGAG GGAAGATTTA
  GTACTCCCCT CCCCCAAGAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147737304	ENSMUSSNP216320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46901084					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			696 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1736 bp distal
Rr603769	regulatory region 603769			687 bp distal
Rr603770	regulatory region 603770			1274 bp distal
Tssr40079	transcription start site region 40079			1686 bp downstream
Tssr44320	transcription start site region 44320			960 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant