rs46898475 SNP Detail

Summary

• ID
  rs46898475
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107161842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATTATA GACACCTGAC
  ACCATGCCTG ATTTGCTGAG CACTGTTTTG TTCTTATTTC TGGATTGGGG ATGAAACCCA
  GAGTCTTGTG TGTGCTAGGC AAACTCTCTA GCCAGTAGTT TTTGATACAG TTCTCATTAT
  ATACCCCAGG TTGGCTCTGA ACGCCAATCC TCCTGCCTCT GTTTCCCTAG TGCTAGGACA
  A
  CAGGCGTTTG CCACCACACC TGGAAAACAG AACTCTTTTT AACTGAGAGA AGACAGTTAA
  CAGACACAAG TGAGTTCCAT GAGCTGGCCC TGGGTCAGGT GGCTTCCAGG GAACTGCTCG
  TCAGACTGTC TCCAGCAATT TGTTCTGTCC CACCAGTGTC TGTCCCACCG GAAACACAGC
  ATAAAAACCA CTGTTCTTAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147177034	ENSMUSSNP2902162	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46898475					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107161842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			1248 bp distal
Rr596968	regulatory region 596968			798 bp distal