rs46891391 SNP Detail

Summary

• ID
  rs46891391
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102110224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT ACATCAGGGG GATAAAGAGT
  W
  CTTGGCACAC TCAGCACATT AATTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135554820	ENSMUSSNP4973340	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320854822	CHEV_3_102006831	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46891391					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102110224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			701 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			229 bp proximal
Rr582208	regulatory region 582208			1045 bp proximal
Rr582209	regulatory region 582209			1148 bp proximal
Rr582210	regulatory region 582210			1775 bp proximal
Tssr34830	transcription start site region 34830			1668 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant