rs46891218 SNP Detail

Summary

• ID
  rs46891218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATTTAGAG AGAGAGGGGG CAAGGGAGAG GGAGGGAGGG
  CATTCGGTGT TCTGTTCACT GACTCTCATT CCTCCTGATT CTCACATTCT CTCTCTCTCT
  Y
  TCTCCCTCTC CCAAGCTCTC ATGTAACCCA GCCAGGCTTC AGACTCACTA CCCGGGAAGG
  ACCTTTTCCA GTTTCTGAAA CGCCTTCCTC CAACTCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss119995965	PARCsnp_1.12060	PARC_SEQ	INBRED	f	SNP			T	C
ss119997560	PARCsnp_1.01049	PARC_SEQ	INBRED	f	SNP			T	C
ss146156088	ENSMUSSNP4893188	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				T
ss320116993	CHEV_1_173120850	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46891218					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018288 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	within coordinates
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1048 bp distal
Rr423237	regulatory region 423237	634 bp distal
Rr423238	regulatory region 423238	373 bp distal