rs46888813 SNP Detail

Summary

• ID
  rs46888813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAACAGAGA AGCAAAGCAG GACACTGTGT AAATAAAAAT
  ACCTGGGCTG TTCCCTGTGG AGCCTTCTGT CTTATCCATC TGATCCGAAG GTGTTCCTTA
  Y
  ATAGTTTCTA TACATTTCCT TTATCGGCTG CATGAATTGC GTAGAGGAGC TCTTAATGAC
  AATTACGTTA ACAAGCGGGT TTCCTTTGGC GTTAGTGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741300	ENSMUSSNP2354873	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320911470	CHEV_3_122122071	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46888813					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212802 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	604 bp upstream
Cpgi13768	CpG island 13768	400 bp proximal
Rr397985	regulatory region 397985	428 bp upstream
Rr584325	regulatory region 584325	within coordinates
Rr584326	regulatory region 584326	188 bp proximal
Rr584327	regulatory region 584327	636 bp proximal
Tssr31494	transcription start site region 31494	586 bp upstream
Tssr31495	transcription start site region 31495	619 bp upstream
Tssr31496	transcription start site region 31496	640 bp upstream
Tssr31497	transcription start site region 31497	713 bp upstream
Tssr31498	transcription start site region 31498	832 bp upstream