rs46888125 SNP Detail

Summary

• ID
  rs46888125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27256111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTACCTG CTCTGGAAAT
  TGCTTTGGTC TTCTGTGTGG CTCACTGTCA GCTCCCACCA ATGTTTGGTT GAACAGCCCT
  GTGTGTCCAC GGCACTTCTG GGCCACCACA AAATCTATAG CTATTTGCTA ACCTCAAGGA
  CAAGGGTCAG ATGAGAGACT GTTGACATTG TCTGTGACCC TTAGCACAGT TTTGGGCATC
  R
  CTCAGTATAG TACCAAGTTA TAAATAGCCT TCCTCCTAGT GCTTAGTGGA TATGAACAGT
  AGCATCCCAG GTAAGTGCTG AGAGAGATAG CATAGGCTGC CTGGATTTTC TAGATAGGTC
  AGTATCATTC CTTTTAAATA TTTTTTTACA CTTATTATTT AGGGGTGTAT ATATATTTGG
  AGCCTGCTTG TGAGAAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702751	ENSMUSSNP5506767	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46888125					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27256111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			within coordinates