rs46885189 SNP Detail

Summary

• ID
  rs46885189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9464475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTTCTG TCCTGCTAAG
  ATGCCCTTAT GTTGTAAGCT GTTTCAAAGC AGTTAAGTAG GAAATTATTT AAGCTTTTTA
  AAAAGCATTT ATTTTGTGTG AGGTGGGGTG GGGCAGGGCG TGTGCACATG TGAAGGTCAG
  AGGACAACAG TGCTTCCCTC CATCCACCAC GCAAGCCCTG GGCATCAGAC TCAGGCCACC
  R
  GGCTCCTTTA TCTGACAATC CATCTCATGG GCCAGGGAAA TGATTTTAAA TTGAATGTGC
  CTGTCCAAAT ACTTGCAGGA GTAACTTCTA TGAAATTTGA AAAAAATATA TGGTAATGTT
  TGTGAAGTTA ACTTGTTTGC CTTGAAAGTG CTTCATGTAC AAGTTCCAGT GAGACAGTTA
  TTTAAAATAT TAAAGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134574437	ENSMUSSNP3515198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320650882	CHEV_3_9399415	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46885189					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9464475 () rs orientation: forward

Symbol	Name	Function Class
Rr374488	regulatory region 374488	within coordinates
Rr573417	regulatory region 573417	878 bp distal
Rr573418	regulatory region 573418	725 bp proximal
Rr573419	regulatory region 573419	936 bp proximal