rs46877152 SNP Detail

Summary

• ID
  rs46877152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141302415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GTTCCAGACG GGGTCTCAAA GTACCTCAGG CCAACCTGGT
  ACTTACTATG TCCTCAAAGA TAACTTTAAA CTTTGGCTCC TCCTGCCTCC ACTTCCTTCC
  R
  GTACTTCTGG CATGCACAGG CCTGCTCAGC CATCACCTGG TCCCCTCTGA AGGTCTTTCT
  GGTTGAATAG GCAGCAACAG GCTCTACATG CTAGTGAGGT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147740985	ENSMUSSNP2699156	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46877152					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141302415 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	958 bp downstream
Gm68503	predicted gene, 68503	within coordinates
Rr377309	regulatory region 377309	1127 bp downstream
Rr603811	regulatory region 603811	923 bp distal
Rr603812	regulatory region 603812	within coordinates
Rr603813	regulatory region 603813	60 bp proximal
Rr603814	regulatory region 603814	468 bp proximal
Rr603815	regulatory region 603815	1955 bp proximal
Tssr40085	transcription start site region 40085	1816 bp downstream
Tssr40086	transcription start site region 40086	1578 bp downstream
Tssr44332	transcription start site region 44332	1701 bp downstream