rs46862127 SNP Detail

Summary

• ID
  rs46862127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41572851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCAGTT TCTCTTTAAG
  GCTTAGCACT GCACTAGATA ATACAGCCTT GTCTATGCCA GTTTGGAAAA CCCTCTCCAT
  AAAGGATGAA GTCAATCTAA TCTGGCCTCC TGTCCACTCC TTGATCTCTG CCGCTCTCCA
  TGCAGCTCAG TTCTTTTTCT GAGTGGACTG CTTTCTCAAG GGAGAATAAT TCTCAGGTTA
  W
  ACGGATACTT GAGGTTTGGA TATTTCTCTT CAGGCAGTGA CACCCAGGGC GTCTTTTTTG
  AGGGCTTTTC TTCGATGGTT CGTTGTCAGG GTTTCTATTG TAACACCCCA ACATTCCCCA
  TTTCTGTGTT TCCATCATCA CTATATGGTT CTTCATTTCT TGCTAGATTG TTGCAACAGC
  TTAGTCTTGT TTCCTTGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397313	NES15898374	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46862127					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397313	NES15898374	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41572851 () rs orientation: forward

Symbol	Name	Function Class
Jade1	jade family PHD finger 1	1552 bp downstream
Rr575994	regulatory region 575994	1132 bp distal
Rr575995	regulatory region 575995	63 bp proximal