rs46861788 SNP Detail

Summary

• ID
  rs46861788
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151475632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGCCAA GTCTTATGTG
  AAATGACCAT GCAGCTGACT AGAGTCCCCT GAAAATGGCA ATTATTTCCC AATCCTGTTG
  CTAAGCCAAA GAAGCTGAAG CCACAGTTAC CTCTCTTGAC AGATAAAGTG TAAGTCTGCC
  TTCCTTCTCT TTATTCAGTT CTTCATACTC TTCCCAAGAC ATACTTTCAG TATTGCTCAA
  K
  GGCTGCATTG AAAAATTATA CCACCACATT TTTGTTATGG CTCTTATTTA TAAAGGAATT
  TGGCTAAATA ATAAAGGGGA CTCTAAAATA TTTGTCACTA GTATGTGTTA AGAATAAAAA
  TGGAACATTT ATATTGTTCT AAGGCTGAAA ATGTTTTAAA TAACCATCAG TAAATTTCCA
  TGTAGATATT TCATCAATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136098002	ENSMUSSNP830528	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss321026836	CHEV_3_151432959	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46861788					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151475632 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1043 bp proximal
Rr587416	regulatory region 587416	1190 bp proximal
Rr587417	regulatory region 587417	1301 bp proximal