rs46858868 SNP Detail

Summary

• ID
  rs46858868
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCCCAT CCTTCCCCTC
  TTCCCACTGC TACAACTCCC TTCCAGTTTC ATGTGCTCAT TTGTTAGACG ACGGAGTCCT
  CTTGGTGTCA CCAATCTATG TGGGTGAAGG ATAATCTAGT GGTAGCCTCA GTGTCACAGC
  CCCTGAGGAA AACTGGCTCT CCCTCTCCTA ACCGCCTTCA GCTGCCCAAG CTCCAGCCCC
  C
  CTTCCCCCCA TACAAAGATA ATCAACGTGA TGCCTAAACA TTTGTGCAGT CACCGTGACA
  TGTGCTACAA GATTTCTGTC AGAGGATTCC TCGTTACCTA CTGACCCACT AAGGCCTGGT
  GGGCCTGGAA TATTTATGCC TTCCCAAGGC ACATTATCGA AATGCCATCT GAGCAGGTGC
  TGACAGAGCT CTGGCGTTCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135760926	ENSMUSSNP4646059	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46858868					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030641 () rs orientation: forward

Symbol	Name	Function Class
Rr584475	regulatory region 584475	566 bp distal
Rr584476	regulatory region 584476	within coordinates
Synpo2	synaptopodin 2	843 bp upstream
Tssr35497	transcription start site region 35497	870 bp upstream
Tssr35498	transcription start site region 35498	835 bp upstream