rs46850958 SNP Detail

Summary

• ID
  rs46850958
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51918460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTGTG TGCACATTTG
  CACCAGCATT TCAGGGATGT TCACGTTTCT CATGAGCTAC CTCATACTTT CATGAAATGG
  ACTAAGGACA AATAATGGGG AGGTAGCAGG CTTTACTGAA ACCCAGATGT GTTTCAAACA
  CAGGCTAGAA TGAAGGCTGA CTCTGCCGGC CTGTGCCTGC CAAACCCTGT AATGTCTGTA
  M
  ACTAAAATGT GCGCTGAGTG AAAAGCTACC AAGCAAGTAA TCACACTCAG TCTCTGAGAC
  AGATCCACAA GGTGCCACTG CTGTGTGTGT GTGGGGGGGG GGGGGGGGCA AAGGCTAATT
  AAGCATAACT GTGACGTAGT CATTCTTTCC CACAGACTCA CTCCGGGAAC ACATAAAAGC
  ATAAGCCTAT GTGGCATGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411340	NES15908545	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46850958					SNP	A	A	A	A	A	A	A	A	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411340	NES15908545	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51918460 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	1471 bp distal
Rr576437	regulatory region 576437	37 bp proximal
Tssr876	transcription start site region 876	1818 bp upstream
Tssr33242	transcription start site region 33242	1944 bp upstream
Tssr33243	transcription start site region 33243	1882 bp upstream
Tssr33244	transcription start site region 33244	1858 bp upstream
Tssr33245	transcription start site region 33245	1799 bp upstream