rs46849300 SNP Detail

Summary

• ID
  rs46849300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57042469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CTCTCCTCAC CCTCAAGCCC
  Y
  ACTGTGTATC AAATATAAAT CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135198831	ENSMUSSNP5914233	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320779455	CHEV_3_56938970	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46849300					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57042469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	1772 bp proximal
Gm8177	predicted gene 8177	446 bp downstream
Rr375016	regulatory region 375016	1310 bp upstream
Rr577070	regulatory region 577070	1738 bp proximal