rs46833733 SNP Detail

Summary

• ID
  rs46833733
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104946764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGACCTT AAACTCAAAT
  GGTGATCCTC CTGCCTTAGT GTCTGATATA CAGAAATCTC TTAAGATGTC CAATGCCATT
  TCAACTTGTC AAGGGCACTA GGCACAAACT TTCCCTCAAT TGCCAAAAGC CTGTCTGCAG
  GAGACATGAC TCACACACAA TGCCACAACG CCACAATGCA CCTCTGAGCA TCATCAGAAC
  K
  AAAGCGTTCT ACCTGCCAAA TCTGGGTAAG GAAACGTCTG CTCTTACTCC CCAGTAACTG
  CAAGGAAACA AATCAACATG CGCTCATTTC CACTATTTAG AAGATGGCCA AACACTGCCA
  ACTTCTATTT TTCCCATCAC GTCTACACAT TAAGTGTTGG CTTATAAACA AATGTTTTTG
  CTTATATTTT TCCAATAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60431134	NES15934552	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46833733					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431134	NES15934552	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104946764 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	594 bp proximal
Rr582654	regulatory region 582654	1598 bp proximal