rs46831854 SNP Detail

Summary

• ID
  rs46831854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172318646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGGTTAG CCCATGAATC GTGGGACCCT CCTGAGTCCT
  GGTTTTGTGA TCTCAAAAAA ACAAAACAAA ACAAAACAAA AAAAAAAAAC CCAGAGGTTC
  Y
  TATCAACCTC TCCCAGGACT TTGACATATC GCCCATGTGT GCTGAGCTCT TCCTTTTGGA
  AGGAAAGGCA AATGAGGCAC GCGAGGCAGA CATCCATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011524	PARCsnp_1.19840	PARC_SEQ	INBRED	f	SNP		T	C
ss120014513	PARCsnp_1.09882	PARC_SEQ	INBRED	f	SNP		T	C
ss146193636	ENSMUSSNP1227239	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320125706	CHEV_1_174421210	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46831854					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172318646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			374 bp distal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			1943 bp distal
Rr423588	regulatory region 423588			1371 bp distal
Rr423589	regulatory region 423589			491 bp distal
Rr423590	regulatory region 423590			312 bp distal
Tssr10205	transcription start site region 10205			1101 bp upstream