rs46829667 SNP Detail

Summary

• ID
  rs46829667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129817167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAATGCTC TTACCTGCTG
  AGCCATCTCT CCAGCCCCTC CTCCTCCTTT TTAAAGGCAG GATGCCACAT ATTCCAGGTT
  TGCCAAAAGC TCTCGGATAG CCAAGGGTGA CCTTGAACTC CTTATTCTTC TCACTCCACA
  ATCTGCGATC TCTGCAGGGC TGGGGATTGG ACACAGGGCT TCATACATGC TAGGGGAGCA
  Y
  TCTACCAAGC AAGCCGCACT CCGGCTCTCC TGCAGTCCTT TAAGTAAGTT TGTTCACACC
  CTCAGAGGGT GGCAGTTACG TTCTCTCACC TCGAAGTTCC CTGGGCTGAG ATGGAGGAAA
  GATGCTATTT CTGCAAGGTA GGGGAAAGGG CAGAGTCTCA AGTTGCTGCC AGAAGAGGGC
  ATCAGACCCC ATTACAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147454355	ENSMUSSNP1165321	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46829667					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129817167 () rs orientation: forward

Symbol	Name	Function Class
Rr600382	regulatory region 600382	1883 bp distal
Rr600383	regulatory region 600383	165 bp proximal
Rr600384	regulatory region 600384	788 bp proximal