rs46829390 SNP Detail

Summary

• ID
  rs46829390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64450788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA CCACTAAACC CAGACACTAT
  Y
  GCATATGCCA ACAAGATTTT GCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146451601	ENSMUSSNP2897564	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321146913	CHEV_4_64193585	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46829390					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64450788 () rs orientation: forward

Symbol	Name	Function Class
Rr593663	regulatory region 593663	1658 bp distal
Rr593664	regulatory region 593664	1779 bp distal
Rr593665	regulatory region 593665	542 bp proximal
Rr593666	regulatory region 593666	693 bp proximal