rs46825559 SNP Detail

Summary

• ID
  rs46825559
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130963357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCTTCCGAG TAGTGTATGC TCTTTTCATG GTGTGCAGAA
  AATGTTATAA TATAACTTTA TGCTGCTTGT TAGAGAATTA GCTTGTCTCT GAACTGCTCC
  T
  TAAGAAGACT TGAGATCTAA GTTTAGATTA ATATTGTTCA TGCTTTCTCT TTCTCTCCCC
  TCCCCTCCTC CCTCTCCCTC CAGCCCCTCA CTCCTTTTTA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135903557	ENSMUSSNP118649	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46825559					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130963357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lef1	lymphoid enhancer binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr585283	regulatory region 585283			790 bp proximal
Tssr31716	transcription start site region 31716			712 bp upstream
Tssr31717	transcription start site region 31717			1994 bp upstream
Tssr35679	transcription start site region 35679			1731 bp downstream