rs46821720 SNP Detail

Summary

• ID
  rs46821720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33971566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG AGATTTGGCT AGACTAGCCC
  Y
  CCTTGCCTCA GACAGTCAAC TGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134760301	ENSMUSSNP2437688	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46821720					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33971566 () rs orientation: forward

Symbol	Name	Function Class
Rr575082	regulatory region 575082	1450 bp distal
Rr575083	regulatory region 575083	1070 bp proximal
Rr575084	regulatory region 575084	1422 bp proximal
Rr575085	regulatory region 575085	1538 bp proximal