rs46820073 SNP Detail

Summary

• ID
  rs46820073
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCCCAT TCTTGGTGTC
  TGGAGCCAGC CTGTGGGCGA CCTGCAGGAT AGAAAGTTCC TCTGGAATAT CTGGGGGCTT
  CTCAGCAGGT AGCAGTGTCT TGGAGAGAGC AGTGGCAGGT GACAGGACAA AAGAGCCAGC
  TAGGTCGGAA GGCTCCACCC TAGGTAATCT CCTTCTTAGT GGTAGCAAGG TCAAAGTCTG
  S
  ATCAGCCTGC TTCAGGGCTG AGGGAGGCTA CAGCCACCCA AGCACCTGCA GTTTAGAAAG
  GCTGTTAGTA ACAGCTCTCC CTGTGTTGGA AGCGGAGAGT TCCCTGTTGT ATAAAACTTT
  ACAAGGAAGG TTCTGTTTGT TCTCTGAAAG GATTACTTCA TGATACTTCA CCACAGTTTT
  ACCTTCTATC TTTACAGGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135873083	ENSMUSSNP2207446	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46820073					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645079 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	956 bp distal
Rr584882	regulatory region 584882	991 bp distal
Rr584883	regulatory region 584883	within coordinates
Rr584884	regulatory region 584884	1337 bp proximal
Rr584885	regulatory region 584885	1974 bp proximal