rs46818927 SNP Detail

Summary

• ID
  rs46818927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127600287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTTCTCT GACAAGCATT AAAGCACACT TCTGACGTTC
  CCTTGCCATT GTCTCAAGTC CCTAAGTAAG AACTGTGCCC TACAGGGTTA AGTGGCCTCC
  K
  CTGGGAAGTC CCAGCCTTTA AGAGACATTT TGTTCTTTGA AAGCAACTGG AGTTCATTGA
  TGCTATAAAT GCCAACCAAA CCCTTCTGCC TTAGCTAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147540783	ENSMUSSNP5047862	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46818927					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127600287 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	726 bp distal
Rr564597	regulatory region 564597	944 bp proximal