rs46817385 SNP Detail

Summary

• ID
  rs46817385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103203685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAGAT AACTGTGCTC
  ATAGCACCAT CTAGTGAGTA AAGTGGGTAA TAGCAGAATC CCCTTTATCA CAGAAATAAG
  AACCCAAAAG TTTAAGACTC CTGTATGCTC ACAGTCAGCT ATTGGATGGA TCACAGGGCC
  CCCAATGGAA GAGCTAGAGA AAATACCCAA GGAGCTAAAG GGATCTGCAA CCCTATAGGT
  R
  GAACAACAAT ATGAACTAAC CAGTACCCCA GAGCTCGTGT TTCTAGCTGC ATATGTAGCA
  GAAGATGGCC TAGTCGGCTA TCATTGGGAA GAGAGGCCCC TTGGTCTTAC AAACTTTATA
  TGCCTAAGTA CAGGGGAACG CCAGGGCCAA AAAGTGGGAG TGGGTGGGTA GGGGAGTGGG
  GGGGAGGGCA TGGGGGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147140850	ENSMUSSNP1797151	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46817385					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103203685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			70 bp distal
Rr596393	regulatory region 596393			159 bp distal
Rr596394	regulatory region 596394			411 bp proximal