rs46815222 SNP Detail

Summary

• ID
  rs46815222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27246768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAAGGAG TGGCTTTTTG
  TCTGTGGTCT GGAAAGACGG CAGGAAGTTG CATGGTAAAG TCTGTGTGTT AGAACAATCT
  TCAGCATTTA TTTTAGATTC TCATAGCCCA GGCTGGTCAC CAACTCCATG TATCCTCTGA
  GGAAGGACCC TGAGCTTGGG ATGTTCTTGC TTCTGTCCCC CAAGGTGCAG AGATCACATG
  Y
  ATTTAGCATC CTGCTGCTGA TGAGGTGCTG ACAACCCCTG GCTTCCACCA TGCTAAGGCA
  AGCACTTCCC AAGGAAGTCT ACTACTAGCA CTCAGGAGTG TTATGGTTTG TTTTCTGGTT
  CTGATGCTAG GGCCTCGTGC ATACTAGGTG TGGTGGTTTG TATATGCTTG GCCCAGGCAG
  TGGCACTATT TGGAGGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134702635	ENSMUSSNP7181574	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46815222					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27246768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			1413 bp downstream
Rr574361	regulatory region 574361			1387 bp distal
Rr574362	regulatory region 574362			426 bp distal
Rr574363	regulatory region 574363			1168 bp proximal
Tssr28610	transcription start site region 28610			473 bp downstream
Tssr28611	transcription start site region 28611			1641 bp upstream
Tssr28612	transcription start site region 28612			1746 bp upstream
Tssr32839	transcription start site region 32839			675 bp upstream
Tssr32840	transcription start site region 32840			633 bp upstream
Tssr32841	transcription start site region 32841			1450 bp downstream
Tssr32842	transcription start site region 32842			1505 bp downstream
Tssr32843	transcription start site region 32843			1576 bp downstream