rs46814756 SNP Detail

Summary

• ID
  rs46814756
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90423652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGTTGGG AACAGGCTGT TGTTGGGCTC TGTGCTTCTG
  TTGAACAATG CTGTTAAGTC CTGCCTATGT CTCTCTGGTC TCATTTTCTC AACATAAAAC
  W
  GGACCCAGAC TTGAATTCTC GAAGATTTAC AGACAGTAAA AACTGAAAGG AGGCTTAACA
  AAAATAAAAC TATAAGCCAG GCATGGTGGT GCATGTCGTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ
ss60424394	NES15924197	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ
rs46814756					SNP	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424394	NES15924197	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90423652 () rs orientation: forward

Symbol	Name	Function Class
Rr580387	regulatory region 580387	1967 bp distal
Rr580388	regulatory region 580388	1946 bp distal
Rr580389	regulatory region 580389	1900 bp distal
Rr580390	regulatory region 580390	716 bp distal
S100a13	S100 calcium binding protein A13	Intron
Tssr30209	transcription start site region 30209	1369 bp downstream
Tssr30210	transcription start site region 30210	1347 bp downstream
Tssr34243	transcription start site region 34243	1979 bp upstream
Tssr34244	transcription start site region 34244	1966 bp upstream
Tssr34245	transcription start site region 34245	1925 bp upstream