rs46814721 SNP Detail

Summary

• ID
  rs46814721
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18619174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTGAGG CTTTCTCCCC
  TGTAAGAGGG GACAGGAGCT GCTTCACATA CAAGGTGACT TTCATATGTA TCTTTCCTAA
  AGGCCTAGGC CTTGCCAGGA CAACACCAGG CTGAGCCTTG CACCAAGTGA GTGGGCATAT
  TGCAAGGCAG GACCAGGGAA ACAGATGCTC AGGGCCCAGC TTCCTCTTCT GCAAAGGTCA
  A
  CGGTATTATG GCCCCTAATA CCCAATACCC AGGAAACTGG CTAGCATATG GCAGGAGCCC
  CAAAGCTATG GGCTAATGTC TCCTGTGTGC CAGAGTTCTA GATGGGAGCA TTGCTTGAAG
  CATATCACGA TAGCCCTGTG TGCATAAAGA CAGAAAAAGA TGTGTTTGGG GTGGACCAAG
  AACCCACTGG CTCCGTGTGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148463509	ENSMUSSNP7086123	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46814721					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18619174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			559 bp distal
Tssr64752	transcription start site region 64752			540 bp downstream