rs46809088 SNP Detail

Summary

• ID
  rs46809088
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:110502864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCCCA CTGCACAAAG
  CGCACCGGGC TCCTGGCTCT CTGCCTGCCA GTCGTGAGTA GCCCACCCCA ACCTCCACCT
  ACTGAAGCTG CCATAGGGGT GGGGTGAGGG TTATGTGTGA AACCAAATCC CACCAACAGA
  GGGCACAGTG GCTCCCTGTA GTTAGAGTCC ATTTGTCTCC ATGGAGCTGA CTTGCGGGTC
  S
  GGAGTTCCTG GACCAGGCAC TGAGCCCTCT GGGTATGAAA GTATAGGACA CAATGGTAAA
  GGCCTGTTGA TCTCACTTGG AGGGGCCAGA AACCTGCCAA GTCAGGAAGC TGGTGTTGAA
  ACTAATAGGA GCTGGAGCAA AACTAGTCTT CAAGCCTATA AGAGTGTGTG TCTATATCTG
  CACATGTATG TTATATGTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61218264	NES16714787	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46809088					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218264	NES16714787	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110502864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrcol1	leucine rich colipase-like 1			Intron
				Noncoding-Transcript-Variant
Rr616873	regulatory region 616873			111 bp distal
Rr616874	regulatory region 616874			51 bp distal