rs46808506 SNP Detail

Summary

• ID
  rs46808506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG CTTCAGACTT TCTGTGCTCA
  W
  CAGCCTTCCT CTCCAGCCTC CGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932518	NES16191107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46808506					SNP	T	T	T	T	T	T	A	T	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932518	NES16191107	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149273 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1689 bp distal
Rr637288	regulatory region 637288	119 bp proximal
Rr637289	regulatory region 637289	1554 bp proximal
Rr637290	regulatory region 637290	1739 bp proximal
Rr637291	regulatory region 637291	1790 bp proximal
Tssr58392	transcription start site region 58392	825 bp downstream
Tssr58393	transcription start site region 58393	806 bp downstream
Tssr58394	transcription start site region 58394	766 bp downstream
Tssr58395	transcription start site region 58395	1180 bp upstream
Tssr58396	transcription start site region 58396	1196 bp upstream
Tssr58397	transcription start site region 58397	1234 bp upstream
Tssr58398	transcription start site region 58398	1260 bp upstream
Tssr58399	transcription start site region 58399	1282 bp upstream
Tssr58400	transcription start site region 58400	1310 bp upstream
Tssr58401	transcription start site region 58401	1346 bp upstream
Tssr58402	transcription start site region 58402	1377 bp upstream
Tssr58403	transcription start site region 58403	1395 bp upstream
Tssr58404	transcription start site region 58404	1414 bp upstream
Tssr58405	transcription start site region 58405	1456 bp upstream
Tssr58406	transcription start site region 58406	1486 bp upstream
Tssr58407	transcription start site region 58407	1517 bp upstream
Tssr58408	transcription start site region 58408	1584 bp upstream
Tssr58409	transcription start site region 58409	1606 bp upstream
Tssr58410	transcription start site region 58410	1628 bp upstream
Tssr58411	transcription start site region 58411	1644 bp upstream
Tssr58412	transcription start site region 58412	1671 bp upstream
Tssr58413	transcription start site region 58413	1684 bp upstream
Tssr58414	transcription start site region 58414	1717 bp upstream
Tssr58415	transcription start site region 58415	1732 bp upstream
Tssr58416	transcription start site region 58416	1747 bp upstream
Tssr58417	transcription start site region 58417	1801 bp upstream
Tssr58418	transcription start site region 58418	1834 bp upstream
Tssr58419	transcription start site region 58419	1853 bp upstream
Tssr58420	transcription start site region 58420	1880 bp upstream
Tssr58421	transcription start site region 58421	1899 bp upstream
Tssr58422	transcription start site region 58422	1925 bp upstream
Tssr58423	transcription start site region 58423	1933 bp upstream
Tssr58424	transcription start site region 58424	1995 bp upstream
Tssr62617	transcription start site region 62617	1244 bp downstream
Tssr62618	transcription start site region 62618	1266 bp downstream
Tssr62619	transcription start site region 62619	1302 bp downstream
Tssr62620	transcription start site region 62620	1345 bp downstream
Tssr62621	transcription start site region 62621	1411 bp downstream
Tssr62622	transcription start site region 62622	1963 bp downstream
Tssr62623	transcription start site region 62623	1981 bp downstream