rs46800363 SNP Detail

Summary

• ID
  rs46800363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65835548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCCAGTT CCTTCGTTCC
  TCATCTCCCA GTCTTGAACT ACACTCAACA GTCCCCTGCG GGCAGCGGTG GCAGTGTGGA
  GGTGGCAGGG AACTGAACTG TGTCTCCAGC CCAGTATCCC TGGGACAGTT CCTCCCCAGC
  GGGACCTGCC TGGTTAGATC AGCCCTAGGT CATCCTGCTT GACCCTGAGC AGAGGTAGTG
  Y
  CCATTGGTGA CAGTCACCTC TGACCCATGA GGATGATTGA CAGTGTTTAA GATGCCATCG
  ACCTCAATTT TCTAGGCCTC TAGCTGAAGG CTCTCCACCT GCCTCAGGCC TGGCTCTATT
  TTTGCCACCA ACTCCTTCCT CCCAGAACTT TTTTGGCTCC TTCTTAAAAA AAAAAAGAAA
  GAAATGGGTC TGGAGAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417557	NES15922249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46800363					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417557	NES15922249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65835548 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	within coordinates
Gm65138	predicted gene, 65138	within coordinates
Rr577758	regulatory region 577758	268 bp distal
Rr577759	regulatory region 577759	within coordinates
Rr577760	regulatory region 577760	534 bp proximal
Rr577761	regulatory region 577761	1240 bp proximal
Rr577762	regulatory region 577762	1541 bp proximal
Tssr33471	transcription start site region 33471	1228 bp downstream
Tssr33472	transcription start site region 33472	1288 bp downstream