rs46797383 SNP Detail

Summary

• ID
  rs46797383
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141235298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTGTTA GTCCAAAAAA
  AGCAATATAA ACCTAATTGC TGACTATCAC AAATTCTCAT GTGTGTACTT CTTTTTTTCT
  CCATAACACT CAAATGGAAA AAATACCGTT TCAATTGAAG CAATTCATCT TACGCTGACT
  TATTCCTTTA TTCAGGACAC AGGGTCTCAC TATGTAGAAC AGGCGAGCCT GCCTCTGCCC
  S
  CCCACCCCCC CCACCGTGGG TTGGGACTAA AGGTATGTGT CACCACACTC AGCAAGAAAC
  TCTTACATGC CAGGTGTGGT GGCGCACGCC TTTAATCCCA GCACTCGGGA GGCAGCAGAG
  GCAGACAGAT TTCTGAGTTC GAGGCCAGGC TGGTCTACAA AGTGAGTTCC AGGACAGCCA
  GGGCTATACA GAGAGACCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147739756	ENSMUSSNP992850	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46797383					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141235298 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			666 bp distal
Rr603782	regulatory region 603782			856 bp distal
Rr603783	regulatory region 603783			583 bp distal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant