rs46796007 SNP Detail

Summary

• ID
  rs46796007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35377802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGACGGC CATTTGAGGA
  TGAAGACTAG GTCAGAATCA GGTGCAGGGC ATCTATTTGG GACAGCTCCA AGCTCCGCAG
  TCTTGCGCAC CTTGGTACCC ACATACCCCA AACGGGGCAA GAACAAGAAG ATGAAAGCTG
  TGCACCCCCA ACCCCAACCC CCACCCCCAG GGCAAGGACT GTAGCCTGCA GGAGGACAGA
  R
  TTTGTGACCT GTTTTCAAAC AAGCCAGCAG AAGCAAGAAT ACAGTCATTC CGCAGGCAGA
  AACTGTAGGC TACTTTTCGC CCACCTTCAA CACCGTAAAC TAGGATTTCA AACCCTTCAG
  AGCTCTCCTG TTTCCTTCCT CTTGCCTGTT CTGTTTCTTG CTTCTTCACA AGTGTCCACA
  AAAAACAGCT CCGTAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386889	NES15881322	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46796007					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386889	NES15881322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35377802 () rs orientation: forward

Symbol	Name	Function Class
Gm35425	predicted gene, 35425	within coordinates
Gm54567	predicted gene, 54567	1961 bp upstream
Rr575230	regulatory region 575230	1349 bp distal
Rr575231	regulatory region 575231	within coordinates
Rr575232	regulatory region 575232	195 bp proximal
Rr575233	regulatory region 575233	242 bp proximal
Rr575234	regulatory region 575234	347 bp proximal