rs46795518 SNP Detail

Summary

• ID
  rs46795518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAAGCA TCCTCTCTGG
  AAGGCTGGAA ACCTTGGGCT CGTGGCAAAT CAGCCTCTTG CCCAGTCCTG CTAGGCTGTA
  TCCTTCTCCT GACAGAGCCC TCCCAGCCTG CTTCTACTTA GGTAGTTTTG AGAGAATTGG
  GTTTTGAGCC TCCTTCTTGC TACCTCTAAA ACTGAGTTAA TGCACCTTCA TCACAGGAGG
  Y
  TCCTAGAATT AAGCAAGGGA GATTAGCTTT ATAGGATGCT CAATATATTG CCTGATCCAT
  AAGAGAGTCT ACAATGGAGG ACACTTAATA CAAGAGATTG AAACCACAGA ATCCAAAAGG
  CCCTTGCCAC AGTTATAAGC CTCATGGTGC GCTAGGTGAG GAGCGTGTGT AAAAAGGCAT
  CCTGTTGGCT TTGTTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134728393	ENSMUSSNP2164879	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46795518					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574711	regulatory region 574711			1937 bp distal
Rr574712	regulatory region 574712			1731 bp distal
Rr574713	regulatory region 574713			1526 bp distal
Rr574714	regulatory region 574714			1321 bp distal