rs46795010 SNP Detail

Summary

• ID
  rs46795010
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTATA ACATGAGGAA
  CTGTATTAAA GGACAGTAGC ACTAGGAAGG TTGAGAACCA CTGCCCTAGG CAAACAGCCC
  TCGAGACAGG TACAGTTTAC AGTCTGGGTA AAGAGATACC CAGCCCAAGT AATCACGGTT
  TAGAGGAAGT CAAACAGTAT TTCTTGTCCA CACAGCGCTT CGTTCATCCA TATACTATCT
  K
  TGTCAGTGCT GTGTGGGAAG ACTGTCTTAC CCTGCAATGT GGATAGCACT GTAAGAAATT
  AAGATGAGAA GACGAAGTCA AAGAAACCAA GAGAACCGGA GGAAGGCTAT AGAGTTAAGA
  ACTGGAAAAG AAAAATGACA AGAATAACAC CAAATCTGTG CCACAGTCTG CTAACCAGCC
  ACCAGTTTCC ACCGGGGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60431121	NES15934360	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46795010					SNP	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431121	NES15934360	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1068 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1165 bp upstream
Rr367520	regulatory region 367520	1161 bp downstream
Rr582659	regulatory region 582659	1371 bp distal
Rr582660	regulatory region 582660	675 bp distal
Rr582661	regulatory region 582661	229 bp proximal
Tssr34913	transcription start site region 34913	1737 bp upstream
Tssr34914	transcription start site region 34914	1594 bp upstream
Tssr34915	transcription start site region 34915	1373 bp upstream
Tssr34916	transcription start site region 34916	1324 bp upstream
Tssr34917	transcription start site region 34917	1160 bp upstream
Tssr34918	transcription start site region 34918	565 bp downstream