rs46794381 SNP Detail

Summary

• ID
  rs46794381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18513299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAGTGTG AAAAGATCAA TTCTATATTA GATGAAAAGA
  ACTTGGGGAG ATTCCAGGTT GCTCAGTGTG GAGAATGTCC AGAGAAGAGC AGAAGTGCTC
  Y
  GCACTTTCTC TCATGCACTG ACCTATGTAT CTCTCCCATC TGGCCATTCA CATATACTTT
  GTTAAATTAT TTATAATAAA ATGATGAATA CAAGTAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134658342	ENSMUSSNP6237941	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320675293	CHEV_3_18359135	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46794381					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18513299 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65525	predicted gene, 65525	within coordinates
Rr573905	regulatory region 573905	1212 bp proximal