rs46793469 SNP Detail

Summary

• ID
  rs46793469
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116507338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACATTGTA GCTCAGGATG GCTCCAGGCT GGCATTGAAG
  GTCTCGATCT CTTAGCAACC ATCCTGTCTC AGCCTCTCTG TGCTAGCTAG GATCAAAAGC
  W
  AGAGCACTCA AATCTGCTTT CTATCCCCTT TTTCCTCCCT ACCAACCCCC CCCCCCCCAA
  TTATTGCCAA TTGACCCTAG GCCTTTGTAC CTCATATACT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436393	NES15938253	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46793469					SNP	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436393	NES15938253	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116507338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13739	CpG island 13739	1180 bp distal
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583765	regulatory region 583765	1469 bp distal
Rr583766	regulatory region 583766	1272 bp distal
Rr583767	regulatory region 583767	1050 bp distal
Rr583768	regulatory region 583768	585 bp distal
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	972 bp upstream
Tssr35331	transcription start site region 35331	1905 bp upstream
Tssr35332	transcription start site region 35332	1842 bp upstream
Tssr35333	transcription start site region 35333	1824 bp upstream
Tssr35334	transcription start site region 35334	1807 bp upstream
Tssr35335	transcription start site region 35335	1449 bp upstream
Tssr35336	transcription start site region 35336	1420 bp upstream
Tssr35337	transcription start site region 35337	1179 bp upstream
Tssr35338	transcription start site region 35338	1034 bp upstream
Tssr35339	transcription start site region 35339	966 bp upstream