rs46788489 SNP Detail

Summary

• ID
  rs46788489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCATGCA GACTGGATAC
  CACTACCTGT TCCTGTGGGT AGGGTGTCCT CACTGAACCC CAAAGAGGCA CAGACCTGTC
  TGGCACAGAG ATAATCACAA TCTTCCTCCA CACCCCCTCT ACCTCCTTTA CCTTGCCCTT
  CAGGCTGTAA GTAGTAAGTG GCCCGAGGGT GTAGATAACC AACACAGCCA GATATGGGAG
  Y
  CTTCCAGCTC ACCCTAAAAT TCCTCCAGCT ACCTGACCAT CATTTCCAAA GAATGTGACA
  TTTGTTCCTG TCCCTTTCAA CTCACAAGGA CTTGCATTGC TGGACCAAGT CTGGCGTGGT
  TAATGGCAAG GGTCCTGCAG ATTTCCCAGG CAGGAGGTGG GGGTAGCAGC CAGCCCCAAG
  AGCGCATGCA TGCCTGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52376024	NES15271661	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46788489					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376024	NES15271661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	871 bp proximal
Rr434375	regulatory region 434375	1530 bp distal
Rr434376	regulatory region 434376	599 bp proximal
Rr434377	regulatory region 434377	1058 bp proximal
Rr434378	regulatory region 434378	1127 bp proximal
Rr434379	regulatory region 434379	1401 bp proximal
Rr434380	regulatory region 434380	1548 bp proximal
Rr434381	regulatory region 434381	1684 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	674 bp upstream
Tssr94203	transcription start site region 94203	635 bp upstream
Tssr94204	transcription start site region 94204	663 bp upstream
Tssr94205	transcription start site region 94205	1116 bp upstream
Tssr94206	transcription start site region 94206	1645 bp upstream
Tssr94207	transcription start site region 94207	1665 bp upstream
Tssr94208	transcription start site region 94208	1695 bp upstream
Tssr94209	transcription start site region 94209	1709 bp upstream