rs46788305 SNP Detail

Summary

• ID
  rs46788305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124037512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTAAAA ATGGTGATTT
  CATATACAGG ACACTACTCA AAAAAAAAAA AAAAGACTAT GTCAGCTCTA TTGGCAAATG
  TTCAGATTGA AAATATATCA ATAGGCTACT ATTTCTCCCA CTCGTGAGCC ATTATTGAAG
  ATGTATGCAT GTCTTTATTT CTGAGCAAGA ATAGGGAAAT AAAATATATC AATTCCAAGG
  W
  TACAATCCCT GACTTAATTC ATAAAAATTA TTGTTTAATG AAAATAATGC TGTTCTAAAG
  CAGGTAGATT TCTTAGAACA AGTTTTTGAG TTTCTATACC TGTATACACA TTTGAGTGAC
  TTTAGACACA AACTGAGTTA TTCTGTCTTA ACATCTTTAG AAATATCAGT AACAGTGGAC
  CCATCACAAA TAATAGCCGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445736	NES15938423	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	A		T
ss320926594	CHEV_3_123946781	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46788305					SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445736	NES15938423	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124037512 () rs orientation: forward

Symbol	Name	Function Class
Rr584580	regulatory region 584580	1986 bp distal