rs46781683 SNP Detail

Summary

• ID
  rs46781683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38541235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGGACTT CGGTCTGTGC
  TCTGGCGTAG ATCTGGGGCT TATTCACAAA GTCAAGCTTT AAGGAGTTGG GCACCTTCTG
  ATTATGCCAC AGATTTGAAG AACCCTGCCT CATGTGTGCT TTCTTGCCAG ATGACATGGT
  CTTTACTGCA GATTTTCCAA AGAGCTTACA TTTGATTCCC ACTGAATCTC AGGAAGGCAC
  R
  CATTGCACAG GTCCTAAGTG TGGGAGACAG TGGCTGACCA CAGCATAGAA CAAGTTCACA
  AGTATATAGC CACGCTGCCT CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTTTGT GTGTGTGAAA GAGAGAGAGA GAGAGAAAGA GAGAGCACAA GCCATTCTTG
  TGAAGTTATA TTTTATGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss134837253	ENSMUSSNP2286881	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss320719980	CHEV_3_38386008	CHEVERUD	SCREENING_POP	f	SNP				G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46781683					SNP	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38541235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13104	CpG island 13104	1680 bp distal
Gm65619	predicted gene, 65619	1603 bp downstream
Rr575676	regulatory region 575676	1971 bp distal
Rr575677	regulatory region 575677	1251 bp distal
Tssr28929	transcription start site region 28929	1875 bp downstream