rs46780249 SNP Detail

Summary

• ID
  rs46780249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40447377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGATCA ATCACATGTG
  CCAACATCTT AGAGTAAACA AGCAGTAAGC TATCAGACTA GCTCTGTCTC TCTGGAGAAT
  CCTGACCACT ATCACAGACG GGGAGTTCCA GCTCTATAGC TCCCATCTTG CTGGCCACAC
  GTCTCCCATC TCTCTTCGGA TGGTTCTTTG TTTATCTTTT CTCTTAGTGT TTTCAGTCCT
  Y
  ATTTTGAGAT TTTGTAAACA TCAGTTTAAG CTCGGGAAGG TTCCTTTGAG AGGGGGTGGA
  GGAAGTGGCT CGCATGTATG TATTTGCACA TGTAAGAGCA CACACGTGCA GGTACATGTA
  GAGTCCGGAG TCTGAGGTTT AGAGTCTTCC TCCACTTTAT TTGATGAGGT AGGATCTCAT
  GATGAACTCA CAAGCCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393791	NES15889678	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46780249					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393791	NES15889678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40447377 () rs orientation: forward

Symbol	Name	Function Class
Rr575809	regulatory region 575809	1128 bp distal
Rr575810	regulatory region 575810	1383 bp distal