rs46779252 SNP Detail

Summary

• ID
  rs46779252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152634457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAAAGC TCCCCGCTTA
  GCCTGCTAAT GACTATCAGA AATATTCACA GTGTTCCCTG GGTTTCTTCT CTTCTCGCGT
  GGTCAGGCTT TAACATGCAG TCCTTAGTCT CAGCCTAATT ACTCACATTT GAAGCGGGAA
  CCTCACATCT GTCACAAAGC TCTTAGGCCA CTTTTAGGAA GGCCTTGCTG TCAACAACAG
  R
  AAGTGGGAGG AGGGGTTGGG GGTGGACTCT CTTATCTCAG ACAATATGTG GAATTGCACC
  TGACTGACAA AGCCACTGAA GAAGCTGGTG ATAATATTAT TACAGTAGCT ACCATATGTC
  TTACATCAAA TGCGGCTCTA GCTTTATCAT TTTCACTGGG GCTCTCTAGA AGGAGATGGG
  AGAGAGCTGC CGCAGAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136104951	ENSMUSSNP4092622	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321029243	CHEV_3_152591784	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46779252					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152634457 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	74 bp upstream
Rr587627	regulatory region 587627	within coordinates
Rr587628	regulatory region 587628	85 bp proximal
Rr587629	regulatory region 587629	1461 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	69 bp upstream
Tssr32428	transcription start site region 32428	1224 bp upstream