rs46777966 SNP Detail

Summary

• ID
  rs46777966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7831332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTTCTA GACGTTCTTA
  GTCTACCTGG TCCTGTTCTC CACATTAGTC CCTCCTGTGT CACTCCCGTC AGAAAGTGCA
  CCAGCCTTTC TGATGCCAAG ACTTTCTCAA TGCCTTGGTA GATTTCTGAA GGTGTGGCTA
  TTATGAATAA AGATCATTTA GAACTTTCCA GAGGGGAGGG GATGCTCTGT GGGAAGGATT
  Y
  TGTCCCGGCA CCTTGGTTTC CTCAAGTTCA TCTCTTGTTT CTGATTTTGA TACTGCAAAG
  GGATACTGAA GTTCTGTCTC TTTCTTAACA TGCGTCTTCC TAGGCAGAGA TCACCCACAG
  CCACAAACAA GCCAATGTTT AGTTGAGGCA GTAGTTAGAC AGATTTGCTG CTAAACAGAT
  AGCTAAAAGG CAGAAGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60861844	NES15993142	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C	T	T	T	C	T	T	C
ss132955750	ENSMUSSNP4679168	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46777966					SNP	C	C	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861844	NES15993142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7831332 () rs orientation: forward

Symbol	Name	Function Class
Rr626323	regulatory region 626323	174 bp distal