rs46774032 SNP Detail

Summary

• ID
  rs46774032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118221667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC CCAAAGGTTT CAATGGCAGT
  Y
  GGCGTGGTCT AACTCCAGCA AGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147306239	ENSMUSSNP5583818	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321282767	CHEV_4_118037075	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46774032					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118221667 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hyi	hydroxypyruvate isomerase (putative)			1726 bp downstream
Rr598383	regulatory region 598383			1852 bp proximal
Szt2	SZT2 subunit of KICSTOR complex			Intron
				Noncoding-Transcript-Variant