rs46764423 SNP Detail

Summary

• ID
  rs46764423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86805818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TATATTTGGT TTTTCTCCCT GTACCAAAAT ATACCCAAGA
  ACAACGTAAA GGAATGCAGG TTGGTTTTGC TCATGATTTC GGGGGTCTCA GTGAATGATC
  R
  GCTGGCCTCG CTGTACTGGA CCTGAGCCAA GACAGATGGC TGAGGCACAC AGTAGAGAAG
  ACTGTTCACC TCTGCCAACA AAAGGTGACA GAGAGATAAG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss135450688	ENSMUSSNP6030677	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs46764423					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86805818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579411	regulatory region 579411			504 bp distal
Tssr33911	transcription start site region 33911			922 bp downstream