rs46758401 SNP Detail

Summary

• ID
  rs46758401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141980239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGAAG TACTTACTAT
  TGACTCTATC ATCAAACAAT GTATACATGT GCCAAATTAT CAGAATGTAC CCCATAAAGA
  TTTACAAATA TGTCCCAACA AAATAAAACT AAATAAATGC CATCTCCCAG CTATTACACT
  GATTTCAGAA TCAACTGTGT TAATCACAGA CTGGAACTTG CTCATTCTGA CCATCTTCCC
  Y
  GACAACTACT GGAGTTATTT TAAAATACTT AGATCAAGTC TGTTTTTCTT TCCGTTGTGG
  AGAGCAGAGC AAATATATGA ACTAACTAGG AAATCAAGCT CTTAGTGGGG CAGCAGCCAT
  GTCCCTGGCT TTTTTCCATG TGAGTCATCA TGGCCCAGTG ACTTGTGCTG TCAGGTTCTG
  CTGCCCTTTG ACCTGCACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61087917	NES16611962	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46758401					SNP	C	C	T	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087917	NES16611962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141980239 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	623 bp upstream
Rr586404	regulatory region 586404	22 bp proximal
Rr586405	regulatory region 586405	626 bp proximal
Rr586406	regulatory region 586406	754 bp proximal