rs46757769 SNP Detail

Summary

• ID
  rs46757769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CACATGTTAG CTCAGGCAGG
  Y
  CTGGCGATAA ACCCAACCCT TCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147152839	ENSMUSSNP4240753	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320445340	CHEV_2_104525854	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46757769					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	216 bp distal
Rr562107	regulatory region 562107	90 bp distal
Rr562108	regulatory region 562108	1136 bp proximal
Rr562109	regulatory region 562109	1648 bp proximal
Tcp11l1	t-complex 11 like 1	Intron