rs46756201 SNP Detail

Summary

• ID
  rs46756201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127671806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA TAAAAGAGCA ATCATTCAGA
  R
  GTGTTCAAAA AGTCAGAAAC AGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147542341	ENSMUSSNP3708652	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320500793	CHEV_2_127655622	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46756201					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127671806 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12232	CpG island 12232	1544 bp proximal
Rr397289	regulatory region 397289	1889 bp upstream
Rr564601	regulatory region 564601	1298 bp proximal
Rr564602	regulatory region 564602	1963 bp proximal
Tssr26147	transcription start site region 26147	1931 bp downstream